IL_3J79_120
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AAAUUAUAU*AAAUAAU
- Length
- 16 nucleotides
- Bulged bases
- 3J79|1|A|A|3584, 3J79|1|A|A|3590
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_69554.1
- Basepair signature
- cWW-L-R-R-R-R-R-L-L-L-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
3J79|1|A|A|3583
3J79|1|A|A|3584
3J79|1|A|A|3585
3J79|1|A|U|3586
3J79|1|A|U|3587
3J79|1|A|A|3588
3J79|1|A|U|3589
3J79|1|A|A|3590
3J79|1|A|U|3591
*
3J79|1|A|A|3613
3J79|1|A|A|3614
3J79|1|A|A|3615
3J79|1|A|U|3616
3J79|1|A|A|3617
3J79|1|A|A|3618
3J79|1|A|U|3619
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 9
- 60S ribosomal protein eL33
- Chain H
- 60S ribosomal protein uL6
- Chain I
- 60S ribosomal protein eL6
- Chain K
- 60S ribosomal protein uL13
- Chain N
- 60S ribosomal protein eL14
- Chain U
- 60S ribosomal protein eL20
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