IL_3J79_125

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGUG*CUUAUCC

Length

11 nucleotides

Bulged bases

3J79|1|A|U|3769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_99283.1

Basepair signature

cWW-cWW-cSW-cWW-cSH-cWW

Number of instances in this motif group

19

Unit IDs

3J79|1|A|G|3719
3J79|1|A|G|3720
3J79|1|A|U|3721
3J79|1|A|G|3722
*
3J79|1|A|C|3765
3J79|1|A|U|3766
3J79|1|A|U|3767
3J79|1|A|A|3768
3J79|1|A|U|3769
3J79|1|A|C|3770
3J79|1|A|C|3771

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain 0

60S ribosomal protein eL24

Chain 7

60S ribosomal protein eL31

Chain E

60S ribosomal protein uL3