IL_3J79_134
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 3J79|1|B|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J79_134 not in the Motif Atlas
- Geometric match to IL_3W3S_003
- Geometric discrepancy: 0.1426
- The information below is about IL_3W3S_003
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10167.6
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 51
Unit IDs
3J79|1|B|G|82
3J79|1|B|G|83
3J79|1|B|U|84
3J79|1|B|G|85
*
3J79|1|B|C|92
3J79|1|B|G|93
3J79|1|B|C|94
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 5
- 60S ribosomal protein uL30
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Q
- 60S ribosomal protein uL16
- Chain U
- 60S ribosomal protein eL20
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