IL_3J79_136
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAA*UCAG
- Length
- 7 nucleotides
- Bulged bases
- 3J79|1|C|A|98
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_09763.1
- Basepair signature
- cWW-cWH-cWW
- Number of instances in this motif group
- 62
Unit IDs
3J79|1|C|C|68
3J79|1|C|A|69
3J79|1|C|A|70
*
3J79|1|C|U|96
3J79|1|C|C|97
3J79|1|C|A|98
3J79|1|C|G|99
Current chains
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain 3
- 60S ribosomal protein uL29
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- 60S ribosomal protein uL24
- Chain c
- 60S ribosomal protein eL37
Coloring options: