IL_3J79_148
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J79_148 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.0713
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
3J79|1|A|G|2166
3J79|1|A|G|2167
3J79|1|A|A|2168
3J79|1|A|A|2169
3J79|1|A|G|2170
3J79|1|A|U|2171
3J79|1|A|C|2172
3J79|1|A|G|2173
3J79|1|A|G|2174
*
3J79|1|A|C|2626
3J79|1|A|U|2627
3J79|1|A|G|2628
3J79|1|A|U|2629
3J79|1|A|C|2630
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain E
- 60S ribosomal protein uL3
- Chain M
- 60S ribosomal protein uL14
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