IL_3J79_150
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUUUG*CUUUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J79_150 not in the Motif Atlas
- Geometric match to IL_8VMB_003
- Geometric discrepancy: 0.3652
- The information below is about IL_8VMB_003
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
3J79|1|A|G|130
3J79|1|A|U|131
3J79|1|A|U|132
3J79|1|A|U|133
3J79|1|A|G|134
*
3J79|1|A|C|143
3J79|1|A|U|144
3J79|1|A|U|145
3J79|1|A|U|146
3J79|1|A|C|147
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain 3
- 60S ribosomal protein uL29
- Chain Y
- 60S ribosomal protein uL23
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