IL_3J79_152

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUUCA*UGUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J79_152 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.306

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

3J79|1|A|A|1907
3J79|1|A|U|1908
3J79|1|A|U|1909
3J79|1|A|C|1910
3J79|1|A|A|1911
*
3J79|1|A|U|1958
3J79|1|A|G|1959
3J79|1|A|U|1960
3J79|1|A|U|1961
3J79|1|A|U|1962

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain d

60S ribosomal protein eL38