IL_3J79_153
3D structure
- PDB id
- 3J79 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUU*AUU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J79_153 not in the Motif Atlas
- Geometric match to IL_3SZX_003
- Geometric discrepancy: 0.1589
- The information below is about IL_3SZX_003
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
3J79|1|A|A|1976
3J79|1|A|U|1977
3J79|1|A|U|1978
*
3J79|1|A|A|1990
3J79|1|A|U|1991
3J79|1|A|U|1992
Current chains
- Chain A
- 28S ribosomal RNA
Nearby chains
- Chain T
- 60S ribosomal protein eL19
- Chain X
- 60S ribosomal protein eL22
- Chain d
- 60S ribosomal protein eL38
Coloring options: