3D structure

PDB id
3J79 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
AUU*AUU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J79_153 not in the Motif Atlas
Geometric match to IL_3SZX_003
Geometric discrepancy: 0.1589
The information below is about IL_3SZX_003
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
Isolated non-canonical cWW pair
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

3J79|1|A|A|1976
3J79|1|A|U|1977
3J79|1|A|U|1978
*
3J79|1|A|A|1990
3J79|1|A|U|1991
3J79|1|A|U|1992

Current chains

Chain A
28S ribosomal RNA

Nearby chains

Chain T
60S ribosomal protein eL19
Chain X
60S ribosomal protein eL22
Chain d
60S ribosomal protein eL38

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0746 s