IL_3J79_153

3D structure

PDB id

3J79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, large subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J79_153 not in the Motif Atlas

Geometric match to IL_3SZX_003

Geometric discrepancy: 0.1589

The information below is about IL_3SZX_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3J79|1|A|A|1976
3J79|1|A|U|1977
3J79|1|A|U|1978
*
3J79|1|A|A|1990
3J79|1|A|U|1991
3J79|1|A|U|1992

Current chains

Chain A

28S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein eL19

Chain X

60S ribosomal protein eL22

Chain d

60S ribosomal protein eL38