IL_3J7A_012

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UAC*GUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UAC,GUA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7A_012 not in the Motif Atlas

Homologous match to IL_4V88_395

Geometric discrepancy: 0.2585

The information below is about IL_4V88_395

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

3J7A|1|A|U|148
3J7A|1|A|A|149
3J7A|1|A|C|150
*
3J7A|1|A|G|160
3J7A|1|A|U|161
3J7A|1|A|A|162

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain 1

40S ribosomal protein eS24

Chain H

40S ribosomal protein eS6