IL_3J7A_045

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUGUCAG*CUUAGAUUUU

Length

17 nucleotides

Bulged bases

3J7A|1|A|A|982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_79378.1

Basepair signature

cWW-cWW-L-R-R-L-L-tHS-tSS-tSS-R-cWW

Number of instances in this motif group

2

Unit IDs

3J7A|1|A|A|962
3J7A|1|A|U|963
3J7A|1|A|G|964
3J7A|1|A|U|965
3J7A|1|A|C|966
3J7A|1|A|A|967
3J7A|1|A|G|968
*
3J7A|1|A|C|979
3J7A|1|A|U|980
3J7A|1|A|U|981
3J7A|1|A|A|982
3J7A|1|A|G|983
3J7A|1|A|A|984
3J7A|1|A|U|985
3J7A|1|A|U|986
3J7A|1|A|U|987
3J7A|1|A|U|988

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain B

40S ribosomal protein eS1

Chain P

40S ribosomal protein uS11