Motif IL_79378.1 Version IL_79378.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 1-16 | 2-15 | 3-14 | 5-12 | 6-9 | 6-11 | 7-8 | 7-12 | 8-12 | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3J7A_045 | 3J7A | 0.0000 | 1 | Kink-turn related (H) | A | SSU rRNA | A | 962 | U | 963 | G | 964 | U | 965 | C | 966 | A | 967 | G | 968 | * | C | 979 | U | 980 | U | 981 | G | 983 | A | 984 | U | 985 | U | 986 | U | 987 | U | 988 | cWW | cwW | ncWB | tSs | tHS | cWW | tsS | ncsS | |
| 2 | IL_3JAM_046 | 3JAM | 0.1377 | 1 | Kink-turn related (H) | 2 | SSU rRNA | U | 892 | U | 893 | G | 894 | U | 895 | C | 896 | A | 897 | G | 898 | * | C | 909 | U | 910 | U | 911 | G | 913 | A | 914 | U | 915 | U | 916 | U | 917 | A | 918 | cWW | cwW | ncWW | ntSs | tHS | cWW | ncsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUGUCAG*CUUAGAUUUU | 1 |
| UUGUCAG*CUUGGAUUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGUCA*UUAGAUUU | 1 |
| UGUCA*UUGGAUUU | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn related (H) (2)
- Basepair signature
- cWW-cWW-L-R-R-L-L-tHS-tSS-tSS-R-cWW
- Heat map statistics
- Min 0.14 | Avg 0.07 | Max 0.14
Coloring options: