IL_3J7A_078

3D structure

PDB id

3J7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine, small subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAA*UAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75779.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

55

Unit IDs

3J7A|1|A|U|1966
3J7A|1|A|G|1967
3J7A|1|A|A|1968
3J7A|1|A|A|1969
*
3J7A|1|A|U|2021
3J7A|1|A|A|2022
3J7A|1|A|A|2023
3J7A|1|A|A|2024

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein eS6

Chain L

40S ribosomal protein eS8