IL_75779.1

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4	break		5		6		7		8	1-8	2-6	2-7	3-6	4-5
1	IL_3J79_128	3J79	0.5955	0	Double sheared; A in syn (H)	A	LSU rRNA	C	3752	G	3753	A	3754	U	3755	*	A	3734	A	3735	A	3736	G	3737	cWW		ntSW		cWW
2	IL_4V91_146	4V91	0.6249	0	Double sheared; A in syn (H)	1	LSU rRNA	A	3342	G	3343	A	3344	G	3345	*	C	3360	G	3361	A	3362	U	3363	cWW		ntsS		cWW
3	IL_4V88_382	4V88	0.5152	0	Double sheared; A in syn (H)	A5	LSU rRNA	A	3342	G	3343	A	3344	G	3345	*	C	3360	G	3361	A	3362	U	3363	cWW		ntsS	tHS	cWW
4	IL_3JAM_030	3JAM	0.3906	0		2	SSU rRNA	U	516	A	517	C	518	A	519	*	U	531	U	532	A	533	A	534	cWW	ncWW	tSH	ntHS	cWW
5	IL_4V4Q_242	4V4Q	0.4044	0	Double sheared (H)	CA	SSU rRNA	G	1416	G	1417	A	1418	G	1419	*	U	1481	G	1482	A	1483	C	1484	cWW		tSH	tHS	cWW
6	IL_3J9W_057	3J9W	0.4385	0	Double sheared (H)	AA	SSU rRNA	A	1425	G	1426	A	1427	G	1428	*	U	1491	G	1492	A	1493	U	1494	cWW		tSH	tHS	cWW
7	IL_5AJ3_041	5AJ3	0.3550	0		A	SSU rRNA	C	907	A	908	A	909	G	910	*	C	860	A	861	A	862	G	863	cWW		ntSH	ntHS	cWW
8	IL_5A2Q_084	5A2Q	0.2990	0	Double sheared (H)	2	SSU rRNA	C	1717	G	1718	A	1719	U	1720	*	A	1813	G	1814	A	1815	G	1816	cWW			ntHS	cWW
9	IL_4V9F_100	4V9F	0.3050	0	Double sheared	0	LSU rRNA	C	2873	G	2874	A	2875	G	2876	*	C	2881	G	2882	A	2883	G	2884	cWW		tSH	tHS	cWW
10	IL_4V8P_434	4V8P	0.3288	0	Double sheared; A in syn (H)	F1	LSU rRNA	A	3300	G	3301	A	3302	G	3303	*	C	3316	G	3317	A	3318	U	3319	cWW		tSH	tHS	cWW
11	IL_3DIR_002	3DIR	0.3527	0		A	RNA (174-MER)	C	19	G	20	A	21	G	22	*	C	70	G	71	A	72	G	73	cWW		tSH	tHS	cWW
12	IL_3J7A_075	3J7A	0.3011	0	Double sheared (H)	A	SSU rRNA	A	2036	A	2037	A	2038	G	2039	*	C	1950	G	1951	A	1952	U	1953	cWW		ntSH	tHS	cWW
13	IL_4V88_468	4V88	0.2538	0	Double sheared	A6	SSU rRNA	A	1744	G	1745	A	1746	G	1747	*	C	1653	G	1654	A	1655	U	1656	cWW		tSH	tHS	cWW
14	IL_3J7P_230	3J7P	0.2361	0	Double sheared (H)	S2	SSU rRNA	A	1813	G	1814	A	1815	G	1816	*	C	1717	G	1718	A	1719	U	1720	cWW		tSH	tHS	cWW
15	IL_3JAM_014	3JAM	0.2861	0	Double sheared (H)	2	SSU rRNA	G	195	A	196	A	197	G	198	*	C	185	G	186	A	187	C	188	cWW		tSH	ntHS	cWW
16	IL_3JAM_080	3JAM	0.2824	0	Double sheared (H)	2	SSU rRNA	A	1742	G	1743	A	1744	G	1745	*	C	1651	G	1652	A	1653	U	1654	cWW		tSH	tHS	cWW
17	IL_4V8P_307	4V8P	0.2778	0		F1	LSU rRNA	G	125	A	126	A	127	G	128	*	C	138	A	139	A	140	C	141	cWW			tHS	cWW
18	IL_5AOX_003	5AOX	0.2388	0	Double sheared	C	ALU JO CONSENSUS RNA	G	58	G	59	A	60	U	61	*	A	105	G	106	A	107	C	108	cWW		tSH	tHS	cWW
19	IL_4KZD_002	4KZD	0.2214	0	Double sheared	R	RNA (84-MER)	G	11	A	12	A	13	A	14	*	U	71	A	72	A	73	C	74	cWW		tSH	tHS	cWW
20	IL_4BTS_344	4BTS	0.2166	0	Double sheared (H)	DA	SSU rRNA	G	1697	G	1698	A	1699	A	1700	*	U	1625	A	1626	A	1627	C	1628	cWW		tSH	tHS	cWW
21	IL_4V8P_309	4V8P	0.2281	0		F1	LSU rRNA	G	254	G	255	A	256	G	257	*	C	162	A	163	A	164	C	165	cWW		ntSH	tHS	cWW
22	IL_1FJG_059	1FJG	0.2053	0	Double sheared (H)	A	SSU rRNA	G	1416	G	1417	A	1418	G	1419	*	U	1481	G	1482	A	1483	C	1484	cWW		tSH	tHS	cWW
23	IL_4XWF_001	4XWF	0.2211	0	Double sheared	A	ZMP/ZTP riboswitch	G	36	G	37	A	38	G	39	*	U	7	G	8	A	9	C	10	cWW		tSH	tHS	cWW
24	IL_5BTP_001	5BTP	0.2093	0		A	RNA (62-MER)	G	41	A	42	A	43	G	44	*	U	12	G	13	A	14	C	15	cWW		tSH	tHS	cWW
25	IL_3J9M_096	3J9M	0.2342	0		AA	SSU rRNA	U	1298	A	1299	A	1300	G	1301	*	C	1274	A	1275	A	1276	A	1277	cWW		tSH	tHS	cWW
26	IL_3D0U_002	3D0U	0.2020	0	Double sheared	A	Lysine Riboswitch RNA	C	16	G	17	A	18	G	19	*	C	67	G	68	A	69	G	70	cWW		tSH	tHS	cWW
27	IL_3J7P_045	3J7P	0.1541	0		5	LSU rRNA	C	1450	G	1451	A	1452	G	1453	*	C	1431	G	1432	A	1433	G	1434	cWW		tSH	tHS	cWW
28	IL_3J9W_158	3J9W	0.1318	0	Double sheared (H)	BA	LSU rRNA	C	2393	G	2394	A	2395	G	2396	*	C	2379	G	2380	A	2381	G	2382	cWW		tSH	tHS	cWW
29	IL_5J7L_333	5J7L	0.0000	0	Double sheared	DA	LSU rRNA	C	2364	G	2365	A	2366	G	2367	*	C	2350	G	2351	A	2352	G	2353	cWW		tSH	tHS	cWW
30	IL_5FDU_091	5FDU	0.1117	0	Double sheared (H)	1A	LSU rRNA	C	2376	G	2377	A	2378	G	2379	*	C	2362	G	2363	A	2364	G	2365	cWW		tSH	tHS	cWW
31	IL_4IOA_083	4IOA	0.1189	0	Double sheared	X	LSU rRNA	C	2343	G	2344	A	2345	G	2346	*	C	2329	G	2330	A	2331	G	2332	cWW		tSH	tHS	cWW
32	IL_1SA9_003	1SA9	0.2009	0		E	RNA (8-mer)	C	303	G	304	A	305	G	306	*	C	303\|\|\|\|4_675	G	304\|\|\|\|4_675	A	305\|\|\|\|4_675	G	306\|\|\|\|4_675	cWW		tSH	tHS	cWW
33	IL_4IOA_058	4IOA	0.2017	0	Double sheared	X	LSU rRNA	C	1491	A	1492	A	1493	G	1494	*	U	1530	C	1531	A	1532	G	1533	cWW		tSH		cWW
34	IL_3J9W_078	3J9W	0.2531	0	Double sheared (H)	BA	LSU rRNA	A	582	G	583	A	584	G	585	*	U	598	G	599	A	600	U	601	cWW		tSH	tHS	cWW
35	IL_5J7L_256	5J7L	0.2479	0	Double sheared	DA	LSU rRNA	G	536	G	537	A	538	G	539	*	U	554	G	555	A	556	C	557	cWW		tSH	tHS	cWW
36	IL_4V88_396	4V88	0.2896	0	Double sheared	A6	SSU rRNA	G	196	A	197	A	198	G	199	*	C	186	G	187	A	188	C	189	cWW		tSH	tHS	cWW
37	IL_3J7A_078	3J7A	0.2713	0	Double sheared (H)	A	SSU rRNA	U	2021	A	2022	A	2023	A	2024	*	U	1966	G	1967	A	1968	A	1969	cWW		tSH	tHS	cWW
38	IL_4BTS_346	4BTS	0.2696	0	Double sheared (H)	DA	SSU rRNA	U	1682	A	1683	A	1684	A	1685	*	U	1640	G	1641	A	1642	A	1643	cWW		tSH	tHS	cWW
39	IL_5A2Q_087	5A2Q	0.2291	0	Double sheared (H)	2	SSU rRNA	C	1798	G	1799	A	1800	A	1801	*	U	1733	G	1734	A	1735	G	1736	cWW		tSH	tHS	cWW
40	IL_3JAM_083	3JAM	0.2905	0	Double sheared (H)	2	SSU rRNA	C	1727	A	1728	A	1729	A	1730	*	U	1667	G	1668	A	1669	G	1670	cWW		tSH	tHS	cWW
41	IL_4V88_471	4V88	0.2994	0	Double sheared	A6	SSU rRNA	C	1729	A	1730	A	1731	A	1732	*	U	1669	G	1670	A	1671	G	1672	cWW		tSH	tHS	cWW
42	IL_4ZNP_002	4ZNP	0.3679	0	Double sheared	A	pfI Riboswitch	G	37	G	38	A	39	C	40	*	G	9	G	10	A	11	C	12	cWW		tSH	tHS	cWW
43	IL_3J79_111	3J79	0.3346	3	Double sheared (H)	A	LSU rRNA	U	3390	G	3391	A	3392	C	3393	*	G	3524	A	3525	A	3528	A	3530	cWW		tSH	tHS	cWW
44	IL_4V8P_419	4V8P	0.3341	2	Double sheared (H)	F1	LSU rRNA	C	2993	G	2994	A	2995	C	2996	*	G	3128	G	3129	A	3131	G	3133	cWW		tSH	tHS	cWW
45	IL_5AN9_046	5AN9	0.3403	1	Double sheared (H)	N	LSU rRNA	U	3340	A	3341	A	3342	U	3343	*	A	3475	G	3476	A	3477	A	3479	cWW		ntSH	tHS	cWW
46	IL_4V88_361	4V88	0.3220	2	Double sheared (H)	A5	LSU rRNA	C	3004	A	3005	A	3006	U	3007	*	A	3139	G	3140	A	3141	G	3144	cWW		tSH	tHS	cWW
47	IL_4V91_123	4V91	0.3391	2	Double sheared (H)	1	LSU rRNA	C	3004	A	3005	A	3006	U	3007	*	A	3139	G	3140	A	3141	G	3144	cWW		ntSH	tHS	cWW
48	IL_3J7P_130	3J7P	0.3225	1	Double sheared (H)	5	LSU rRNA	C	4582	C	4583	A	4584	U	4585	*	A	4717	G	4718	G	4719	G	4721	cWW			tHS	cWW
49	IL_4BTS_265	4BTS	0.2664	1		DA	SSU rRNA	U	37	A	38	A	39	A	40	*	U	458	G	459	C	461	A	462	cWW		tSH	tHS	cWW
50	IL_5A2Q_003	5A2Q	0.2692	1		2	SSU rRNA	C	37	A	38	A	39	A	40	*	U	514	G	515	C	517	G	518	cWW		tSH	tHS	cWW
51	IL_3J7P_158	3J7P	0.2668	1		S2	SSU rRNA	C	37	A	38	A	39	A	40	*	U	514	G	515	C	517	G	518	cWW		tSH	tHS	cWW
52	IL_5AJ0_159	5AJ0	0.4832	1		A2	LSU rRNA	C	4544	C	4545	A	4546	U	4547	*	A	4679	G	4680	G	4681	G	4683	cWW			tHS	cWW
53	IL_3J7A_063	3J7A	0.6609	0		A	SSU rRNA	G	1451	C	1452	G	1453	G	1454	*	C	1609	U	1610	G	1621	C	1622	cWW			ncWW	cWW
54	IL_5J7L_327	5J7L	0.6015	0	Other IL	DA	LSU rRNA	A	2183	A	2184	U	2185	G	2186	*	C	2103	C	2104	U	2105	U	2106	ncWW		ntSH	ncWW	cWW
55	IL_2IL9_002	2IL9	0.7125	0		M	Ribosomal Binding Domain of the IRES RNA	U	6018	A	6019	U	6020	U	6021	*	A	6058	A	6059	U	6060	A	6061	cWW		ncWW		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAG*CGAG	9
AGAG*CGAU	6
GGAG*UGAC	4
AGAG*UGAU	2
GAAG*CGAC	2
UAAA*UGAA	2
CAAA*UGAG	2
CAAU*AGAACG	2
CCAU*AGGCG	2
CAAA*UGACG	2
CGAU*AAAG	1
UACA*UUAA	1
CAAG*CAAG	1
CGAU*AGAG	1
AAAG*CGAU	1
GAAG*CAAC	1
GGAU*AGAC	1
GAAA*UAAC	1
GGAA*UAAC	1
GGAG*CAAC	1
GAAG*UGAC	1
UAAG*CAAA	1
CAAG*UCAG	1
CGAA*UGAG	1
GGAC*GGAC	1
UGAC*GAUUAAA	1
CGAC*GGAAAG	1
UAAU*AGAAA	1
UAAA*UGACA	1
GCGG*CUGC	1
AAUG*CCUU	1
UAUU*AAUA	1

Non-Watson-Crick part of the motif

Sequence	Counts
GA*GA	25
AA*GA	8
AA*AA	4
GA*AA	3
AA*GAC	3
AA*GAAC	2
CA*GGC	2
AC*UA	1
AA*CA	1
GA*AUUAA	1
GA*GAAA	1
AA*GAA	1
CG*UG	1
AU*CU	1
AU*AU	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_75779.1 Version IL_75779.1 of this group appears in releases 2.0 to 2.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_75779.1 Version IL_75779.1 of this group appears in releases 2.0 to 2.0

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Csv

Json