IL_3J7P_022

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGCCGUG*CCGGCGACC

Length

16 nucleotides

Bulged bases

3J7P|1|5|G|666

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05918.1

Basepair signature

cWW-cWW-L-R-R-L-cWW-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

3J7P|1|5|G|487
3J7P|1|5|G|488
3J7P|1|5|C|489
3J7P|1|5|C|490
3J7P|1|5|G|491
3J7P|1|5|U|492
3J7P|1|5|G|493
*
3J7P|1|5|C|661
3J7P|1|5|C|662
3J7P|1|5|G|663
3J7P|1|5|G|664
3J7P|1|5|C|665
3J7P|1|5|G|666
3J7P|1|5|A|667
3J7P|1|5|C|668
3J7P|1|5|C|669

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain Q

Ribosomal protein eL18

Chain r

Ribosomal protein eL28