IL_3J7P_031

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAGG*CAGCAGCACUC

Length

16 nucleotides

Bulged bases

3J7P|1|5|G|933, 3J7P|1|5|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82257.1

Basepair signature

cWW-L-R-R-R-L-L-L-L-L-cWW

Number of instances in this motif group

2

Unit IDs

3J7P|1|5|G|731
3J7P|1|5|A|732
3J7P|1|5|A|733
3J7P|1|5|G|734
3J7P|1|5|G|735
*
3J7P|1|5|C|928
3J7P|1|5|A|929
3J7P|1|5|G|930
3J7P|1|5|C|931
3J7P|1|5|A|932
3J7P|1|5|G|933
3J7P|1|5|C|934
3J7P|1|5|A|935
3J7P|1|5|C|936
3J7P|1|5|U|937
3J7P|1|5|C|938

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain M

Ribosomal protein eL14

Chain S

Ribosomal protein eL20