3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGCUCAUCAG*CUGGAGCG
Length
18 nucleotides
Bulged bases
3J7P|1|5|U|1930, 3J7P|1|5|C|1931, 3J7P|1|5|G|2055, 3J7P|1|5|A|2057
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_69989.1
Basepair signature
cWW-L-R-R-R-R-L-L-L-L-L-cWW
Number of instances in this motif group
2

Unit IDs

3J7P|1|5|C|1924
3J7P|1|5|G|1925
3J7P|1|5|C|1926
3J7P|1|5|U|1927
3J7P|1|5|C|1928
3J7P|1|5|A|1929
3J7P|1|5|U|1930
3J7P|1|5|C|1931
3J7P|1|5|A|1932
3J7P|1|5|G|1933
*
3J7P|1|5|C|2053
3J7P|1|5|U|2054
3J7P|1|5|G|2055
3J7P|1|5|G|2056
3J7P|1|5|A|2057
3J7P|1|5|G|2058
3J7P|1|5|C|2059
3J7P|1|5|G|2060

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain H
Ribosomal protein uL6
Chain M
Ribosomal protein eL14
Chain O
Ribosomal protein uL13
Chain S
Ribosomal protein eL20
Chain m
Ribosomal protein eL40

Coloring options:

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