IL_3J7P_069

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGCUCAUCAG*CUGGAGCG

Length

18 nucleotides

Bulged bases

3J7P|1|5|U|1930, 3J7P|1|5|C|1931, 3J7P|1|5|G|2055, 3J7P|1|5|A|2057

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69989.1

Basepair signature

cWW-L-R-R-R-R-L-L-L-L-L-cWW

Number of instances in this motif group

2

Unit IDs

3J7P|1|5|C|1924
3J7P|1|5|G|1925
3J7P|1|5|C|1926
3J7P|1|5|U|1927
3J7P|1|5|C|1928
3J7P|1|5|A|1929
3J7P|1|5|U|1930
3J7P|1|5|C|1931
3J7P|1|5|A|1932
3J7P|1|5|G|1933
*
3J7P|1|5|C|2053
3J7P|1|5|U|2054
3J7P|1|5|G|2055
3J7P|1|5|G|2056
3J7P|1|5|A|2057
3J7P|1|5|G|2058
3J7P|1|5|C|2059
3J7P|1|5|G|2060

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain H

Ribosomal protein uL6

Chain M

Ribosomal protein eL14

Chain O

Ribosomal protein uL13

Chain S

Ribosomal protein eL20

Chain m

Ribosomal protein eL40