IL_3J7P_071

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGUU*AGCC

Length

9 nucleotides

Bulged bases

3J7P|1|5|U|1947

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90094.1

Basepair signature

cWW-cWW-tWW-cWW

Number of instances in this motif group

11

Unit IDs

3J7P|1|5|G|1946
3J7P|1|5|U|1947
3J7P|1|5|G|1948
3J7P|1|5|U|1949
3J7P|1|5|U|1950
*
3J7P|1|5|A|2033
3J7P|1|5|G|2034
3J7P|1|5|C|2035
3J7P|1|5|C|2036

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain H

Ribosomal protein uL6

Chain I

Ribosomal protein uL16

Chain S

Ribosomal protein eL20

Chain m

Ribosomal protein eL40