IL_3J7P_105

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAAAUGCCUCGUCA*UGACGCG

Length

22 nucleotides

Bulged bases

3J7P|1|5|A|3785, 3J7P|1|5|C|3791, 3J7P|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22169.1

Basepair signature

cWW-L-tHW-tWW-L-L-tHH-cSH-tWH-cWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

3J7P|1|5|C|3781
3J7P|1|5|C|3782
3J7P|1|5|A|3783
3J7P|1|5|A|3784
3J7P|1|5|A|3785
3J7P|1|5|U|3786
3J7P|1|5|G|3787
3J7P|1|5|C|3788
3J7P|1|5|C|3789
3J7P|1|5|U|3790
3J7P|1|5|C|3791
3J7P|1|5|G|3792
3J7P|1|5|U|3793
3J7P|1|5|C|3794
3J7P|1|5|A|3795
*
3J7P|1|5|U|3805
3J7P|1|5|G|3806
3J7P|1|5|A|3807
3J7P|1|5|C|3808
3J7P|1|5|G|3809
3J7P|1|5|C|3810
3J7P|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain n

Ribosomal protein eL41