3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CAGUG*CUAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_30069.1
Basepair signature
cWW-L-R-R-L-L-cWW
Number of instances in this motif group
4

Unit IDs

3J7P|1|S2|C|223
3J7P|1|S2|A|224
3J7P|1|S2|G|225
3J7P|1|S2|U|287
3J7P|1|S2|G|288
*
3J7P|1|S2|C|295
3J7P|1|S2|U|296
3J7P|1|S2|A|297
3J7P|1|S2|G|298

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SE
Ribosomal protein eS4
Chain SG
Ribosomal protein eS6
Chain SI
Ribosomal protein eS8
Chain SL
Ribosomal protein uS17

Coloring options:

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