IL_3J7P_188

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68393.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

26

Unit IDs

3J7P|1|S2|C|676
3J7P|1|S2|G|677
3J7P|1|S2|U|678
3J7P|1|S2|A|679
3J7P|1|S2|G|680
*
3J7P|1|S2|U|1025
3J7P|1|S2|C|1026
3J7P|1|S2|A|1027
3J7P|1|S2|A|1028
3J7P|1|S2|G|1029

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain SL

Ribosomal protein uS17

Chain SN

Ribosomal protein uS15

Chain SW

Ribosomal protein uS8

Chain SX

Ribosomal protein uS12