3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AUUC*GGACCAGAGCGAAAGCAUUU
Length
24 nucleotides
Bulged bases
3J7P|1|S2|G|991
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09356.1
Basepair signature
cWW-cWW-cWW-R-cWW-L-L-L-L-L-cWW-bif-R-tSH-R-R
Number of instances in this motif group
1

Unit IDs

3J7P|1|S2|A|938
3J7P|1|S2|U|939
3J7P|1|S2|U|940
3J7P|1|S2|C|941
*
3J7P|1|S2|G|985
3J7P|1|S2|G|986
3J7P|1|S2|A|987
3J7P|1|S2|C|988
3J7P|1|S2|C|989
3J7P|1|S2|A|990
3J7P|1|S2|G|991
3J7P|1|S2|A|992
3J7P|1|S2|G|993
3J7P|1|S2|C|994
3J7P|1|S2|G|995
3J7P|1|S2|A|996
3J7P|1|S2|A|997
3J7P|1|S2|A|998
3J7P|1|S2|G|999
3J7P|1|S2|C|1000
3J7P|1|S2|A|1001
3J7P|1|S2|U|1002
3J7P|1|S2|U|1003
3J7P|1|S2|U|1004

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SB
Ribosomal protein eS1
Chain SN
Ribosomal protein uS15
Chain SO
Ribosomal protein uS11
Chain Sa
Ribosomal protein eS26
Chain p
Ribosomal protein eL43

Coloring options:

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