3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GCCGAAU*ACAUGUGGC
Length
16 nucleotides
Bulged bases
3J7P|1|5|G|119, 3J7P|1|5|U|150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J7P|1|5|G|116
3J7P|1|5|C|117
3J7P|1|5|C|118
3J7P|1|5|G|119
3J7P|1|5|A|120
3J7P|1|5|A|121
3J7P|1|5|U|122
*
3J7P|1|5|A|147
3J7P|1|5|C|148
3J7P|1|5|A|149
3J7P|1|5|U|150
3J7P|1|5|G|151
3J7P|1|5|U|152
3J7P|1|5|G|153
3J7P|1|5|G|154
3J7P|1|5|C|155

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain G
Ribosomal protein eL8
Chain N
Ribosomal protein eL15
Chain h
Ribosomal protein uL29
Chain i
Ribosomal protein eL36

Coloring options:

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