IL_3J7P_257

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGUCGAGAGUGGACGGGAGCGGCGGGGGCGGCGCGCGCGCG*CCCCCGGAGCCCCGCGGACGCUACG

Length

67 nucleotides

Bulged bases

3J7P|1|5|U|2090, 3J7P|1|5|A|2093, 3J7P|1|5|G|2111, 3J7P|1|5|G|2114, 3J7P|1|5|G|2115, 3J7P|1|5|C|2116, 3J7P|1|5|C|2119, 3J7P|1|5|G|2122, 3J7P|1|5|C|2123, 3J7P|1|5|G|2124, 3J7P|1|5|C|2248, 3J7P|1|5|C|2249, 3J7P|1|5|C|2256, 3J7P|1|5|G|2259, 3J7P|1|5|C|2260, 3J7P|1|5|U|2267, 3J7P|1|5|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3J7P|1|5|C|2087
3J7P|1|5|A|2088
3J7P|1|5|G|2089
3J7P|1|5|U|2090
3J7P|1|5|C|2091
3J7P|1|5|G|2092
3J7P|1|5|A|2093
3J7P|1|5|G|2094
3J7P|1|5|A|2095
3J7P|1|5|G|2096
3J7P|1|5|U|2097
3J7P|1|5|G|2098
3J7P|1|5|G|2099
3J7P|1|5|A|2100
3J7P|1|5|C|2101
3J7P|1|5|G|2102
3J7P|1|5|G|2103
3J7P|1|5|G|2104
3J7P|1|5|A|2105
3J7P|1|5|G|2106
3J7P|1|5|C|2107
3J7P|1|5|G|2108
3J7P|1|5|G|2109
3J7P|1|5|C|2110
3J7P|1|5|G|2111
3J7P|1|5|G|2112
3J7P|1|5|G|2113
3J7P|1|5|G|2114
3J7P|1|5|G|2115
3J7P|1|5|C|2116
3J7P|1|5|G|2117
3J7P|1|5|G|2118
3J7P|1|5|C|2119
3J7P|1|5|G|2120
3J7P|1|5|C|2121
3J7P|1|5|G|2122
3J7P|1|5|C|2123
3J7P|1|5|G|2124
3J7P|1|5|C|2125
3J7P|1|5|G|2126
3J7P|1|5|C|2127
3J7P|1|5|G|2128
*
3J7P|1|5|C|2246
3J7P|1|5|C|2247
3J7P|1|5|C|2248
3J7P|1|5|C|2249
3J7P|1|5|C|2250
3J7P|1|5|G|2251
3J7P|1|5|G|2252
3J7P|1|5|A|2253
3J7P|1|5|G|2254
3J7P|1|5|C|2255
3J7P|1|5|C|2256
3J7P|1|5|C|2257
3J7P|1|5|C|2258
3J7P|1|5|G|2259
3J7P|1|5|C|2260
3J7P|1|5|G|2261
3J7P|1|5|G|2262
3J7P|1|5|A|2263
3J7P|1|5|C|2264
3J7P|1|5|G|2265
3J7P|1|5|C|2266
3J7P|1|5|U|2267
3J7P|1|5|A|2268
3J7P|1|5|C|2269
3J7P|1|5|G|2270

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain E

Ribosomal protein eL6

Chain F

Ribosomal protein uL30

Chain Q

Ribosomal protein eL18

Chain e

Ribosomal protein eL32

Chain r

Ribosomal protein eL28