IL_3J7P_277

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CACC*GGUCG

Length

9 nucleotides

Bulged bases

3J7P|1|7|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7P_277 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2164

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J7P|1|7|C|15
3J7P|1|7|A|16
3J7P|1|7|C|17
3J7P|1|7|C|18
*
3J7P|1|7|G|60
3J7P|1|7|G|61
3J7P|1|7|U|62
3J7P|1|7|C|63
3J7P|1|7|G|64

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain D

Ribosomal protein uL18

Chain I

Ribosomal protein uL16

Chain J

Ribosomal protein uL5