3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UAUGGUU*GAACG
Length
12 nucleotides
Bulged bases
3J7P|1|S2|G|113, 3J7P|1|S2|G|114
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J7P_279 not in the Motif Atlas
Geometric match to IL_8SP9_002
Geometric discrepancy: 0.3202
The information below is about IL_8SP9_002
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

3J7P|1|S2|U|110
3J7P|1|S2|A|111
3J7P|1|S2|U|112
3J7P|1|S2|G|113
3J7P|1|S2|G|114
3J7P|1|S2|U|115
3J7P|1|S2|U|116
*
3J7P|1|S2|G|347
3J7P|1|S2|A|348
3J7P|1|S2|A|349
3J7P|1|S2|C|350
3J7P|1|S2|G|351

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SE
Ribosomal protein eS4
Chain SI
Ribosomal protein eS8
Chain SL
Ribosomal protein uS17

Coloring options:


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