3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
AG*CGCGGUAAUUCCAGCU
Length
18 nucleotides
Bulged bases
3J7P|1|S2|G|626, 3J7P|1|S2|U|627, 3J7P|1|S2|A|628, 3J7P|1|S2|U|630
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J7P|1|S2|A|599
3J7P|1|S2|G|600
*
3J7P|1|S2|C|622
3J7P|1|S2|G|623
3J7P|1|S2|C|624
3J7P|1|S2|G|625
3J7P|1|S2|G|626
3J7P|1|S2|U|627
3J7P|1|S2|A|628
3J7P|1|S2|A|629
3J7P|1|S2|U|630
3J7P|1|S2|U|631
3J7P|1|S2|C|632
3J7P|1|S2|C|633
3J7P|1|S2|A|634
3J7P|1|S2|G|635
3J7P|1|S2|C|636
3J7P|1|S2|U|637

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SD
Ribosomal protein uS3
Chain SX
Ribosomal protein uS12
Chain Se
Ribosomal protein eS30

Coloring options:

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