3D structure

PDB id
3J7P (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GCUCAGCGUG*CCGUUGAACCC
Length
21 nucleotides
Bulged bases
3J7P|1|S2|U|1585, 3J7P|1|S2|G|1587
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3J7P|1|S2|G|1541
3J7P|1|S2|C|1542
3J7P|1|S2|U|1543
3J7P|1|S2|C|1544
3J7P|1|S2|A|1545
3J7P|1|S2|G|1546
3J7P|1|S2|C|1547
3J7P|1|S2|G|1548
3J7P|1|S2|U|1549
3J7P|1|S2|G|1550
*
3J7P|1|S2|C|1582
3J7P|1|S2|C|1583
3J7P|1|S2|G|1584
3J7P|1|S2|U|1585
3J7P|1|S2|U|1586
3J7P|1|S2|G|1587
3J7P|1|S2|A|1588
3J7P|1|S2|A|1589
3J7P|1|S2|C|1590
3J7P|1|S2|C|1591
3J7P|1|S2|C|1592

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain SD
Ribosomal protein uS3
Chain SF
Ribosomal protein uS7
Chain SQ
Ribosomal protein uS9
Chain ST
Ribosomal protein eS19
Chain SU
Ribosomal protein uS10
Chain SZ
Ribosomal protein es25
Chain Sd
Ribosomal protein uS14

Coloring options:

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