IL_3J7P_299

3D structure

PDB id

3J7P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAG*CGAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7P_299 not in the Motif Atlas

Homologous match to IL_8C3A_478

Geometric discrepancy: 0.171

The information below is about IL_8C3A_478

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

3J7P|1|S2|U|1733
3J7P|1|S2|G|1734
3J7P|1|S2|A|1735
3J7P|1|S2|G|1736
*
3J7P|1|S2|C|1798
3J7P|1|S2|G|1799
3J7P|1|S2|A|1800
3J7P|1|S2|A|1801

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain SG

Ribosomal protein eS6

Chain SI

Ribosomal protein eS8

Chain W

Ribosomal protein eL24