IL_3J7Q_005
3D structure
- PDB id
- 3J7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the idle mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J7Q_005 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.2132
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84694.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J7Q|1|5|C|30
3J7Q|1|5|U|31
3J7Q|1|5|G|32
3J7Q|1|5|A|33
3J7Q|1|5|A|34
3J7Q|1|5|U|35
3J7Q|1|5|U|36
3J7Q|1|5|U|37
*
3J7Q|1|5|A|44
3J7Q|1|5|U|45
3J7Q|1|5|U|46
3J7Q|1|5|A|47
3J7Q|1|5|G|48
3J7Q|1|5|U|49
3J7Q|1|5|C|50
3J7Q|1|5|A|51
3J7Q|1|5|G|52
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain L
- Ribosomal protein eL13
- Chain N
- Ribosomal protein eL15
- Chain a
- Ribosomal protein uL15
- Chain j
- Ribosomal protein eL37
- Chain o
- Ribosomal protein eL42
Coloring options: