IL_3J7Q_012
3D structure
- PDB id
- 3J7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the idle mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UCGUGG*CG
- Length
- 8 nucleotides
- Bulged bases
- 3J7Q|1|5|G|188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J7Q_012 not in the Motif Atlas
- Geometric match to IL_1NBS_009
- Geometric discrepancy: 0.249
- The information below is about IL_1NBS_009
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_82107.4
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 30
Unit IDs
3J7Q|1|5|U|184
3J7Q|1|5|C|185
3J7Q|1|5|G|186
3J7Q|1|5|U|187
3J7Q|1|5|G|188
3J7Q|1|5|G|189
*
3J7Q|1|5|C|252
3J7Q|1|5|G|253
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Ribosomal protein uL4
- Chain L
- Ribosomal protein eL13
- Chain Y
- Ribosomal protein uL24
- Chain j
- Ribosomal protein eL37
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