IL_3J7Q_014

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

3J7Q|1|5|C|340

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Q_014 not in the Motif Atlas

Geometric match to IL_7RQB_073

Geometric discrepancy: 0.3118

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

3J7Q|1|5|C|339
3J7Q|1|5|C|340
3J7Q|1|5|G|341
3J7Q|1|5|G|342
*
3J7Q|1|8|C|32
3J7Q|1|8|G|33

Current chains

Chain 5

28S ribosomal RNA

Chain 8

5.8S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain L

Ribosomal protein eL13

Chain N

Ribosomal protein eL15

Chain j

Ribosomal protein eL37