IL_3J7Q_027

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUUUC*GGG

Length

8 nucleotides

Bulged bases

3J7Q|1|5|U|513, 3J7Q|1|5|U|514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Q_027 not in the Motif Atlas

Geometric match to IL_3KTW_002

Geometric discrepancy: 0.2933

The information below is about IL_3KTW_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

3J7Q|1|5|C|511
3J7Q|1|5|U|512
3J7Q|1|5|U|513
3J7Q|1|5|U|514
3J7Q|1|5|C|515
*
3J7Q|1|5|G|646
3J7Q|1|5|G|647
3J7Q|1|5|G|648

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein eL13

Chain a

Ribosomal protein uL15