Motif IL_43275.2 Version IL_43275.2 of this group appears in releases 3.87 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3	break		4		5		6	1-6	2-3	2-5	3-4
1	IL_5J7L_009	5J7L	0.3408	1	Isolated non-canonical cWW pair	AA	SSU rRNA	G	128	A	129	A	131	*	U	231	G	232	C	233	cWW		cWW	cWW
2	IL_1U6B_001	1U6B	0.3460	1	Isolated non-canonical cWW pair	B	197-MER	G	19	C	20	G	22	*	C	29	A	30	C	31	cWW		ncWW	cWW
3	IL_4RUM_001	4RUM	0.2328	1	Isolated non-canonical cWW pair	A	NiCo riboswitch	G	13	A	14	C	16	*	G	88	A	89	C	90	cWW		cwW	cWW
4	IL_8VTW_040	8VTW	0.1364	1	Isolated non-canonical cWW pair (H)	1A	LSU rRNA	G	1031	A	1032	G	1034	*	C	1121	G	1122	C	1123	cWW		cWW	cWW
5	IL_5J7L_282	5J7L	0.1071	1	Isolated non-canonical cWW pair	DA	LSU rRNA	G	1031	A	1032	G	1034	*	C	1121	G	1122	C	1123	cWW		cWW	cWW
6	IL_7A0S_038	7A0S	0.1013	1	Isolated non-canonical cWW pair	X	LSU rRNA	G	1042	A	1043	G	1045	*	C	1132	G	1133	C	1134	cWW		ncWW	cWW
7	IL_4WF9_041	4WF9	0.0000	1	Isolated non-canonical cWW pair	X	LSU rRNA	G	1075	A	1076	G	1078	*	C	1165	G	1166	C	1167	cWW		ncWW	cWW
8	IL_4K31_003	4K31	0.1683	1	Isolated non-canonical cWW pair	B+C	RNA (23-mer)	A	16	A	17	G	19	*	C	7	G	8	U	9	cWW		cWW	cWW
9	IL_4K31_002	4K31	0.1889	1	Isolated non-canonical cWW pair	C+B	RNA (23-mer)	A	16	A	17	G	19	*	C	7	G	8	U	9	cWW		cWW	cWW
10	IL_6TFF_003	6TFF	0.2441	1		A	nadA RNA	C	34	A	35	C	37	*	G	23	G	24	G	25	cWW		cWW	cWW
11	IL_7D7W_003	7D7W	0.3566	1		A	nadA RNA	C	34	A	35	C	37	*	G	23	G	24	G	25	cWW		cWW	cWW
12	IL_7D7V_003	7D7V	0.3899	1		A	nadA RNA	C	41	A	42	U	44	*	G	22	G	23	G	24	cWW		cWW	cWW
13	IL_4ZC7_002	4ZC7	0.5006	0		B+A	RNA duplex	A	39	A	40	G	42	*	C	7	G	8	U	9	cWW		ncWW	cWW
14	IL_6WBR_001	6WBR	0.5358	0	Isolated non-canonical cWW pair	B	RNA (94-MER)	G	26	G	27	A	28	*	U	41	A	42	C	43	cWW			cWW
15	IL_3E5C_001	3E5C	0.5123	3	Isolated non-canonical cWW pair	A	SMK box (SAM-III) Riboswitch	A	27	G	28	C	32	*	G	12	A	13	U	14	cWW		cWW	cWW
16	IL_3TD0_005	3TD0	0.4839	1	Isolated non-canonical cWW pair	A+B	RNA (23-mer)	G	16	A	17	G	19	*	C	30	G	31	C	32	cWW		cWW	cWW
17	IL_3TD0_002	3TD0	0.5396	1	Isolated non-canonical cWW pair	B+A	RNA (23-mer)	G	39	A	40	G	42	*	C	7	G	8	C	9	cWW		cWW	cWW
18	IL_7LYF_004	7LYF	0.6818	1	Isolated non-canonical cWW pair	A	Dengue virus SLA	C	51	G	52	C	54	*	G	70	A	71	G	72	cWW		cWW	cWW
19	IL_5M0H_001	5M0H	0.6126	1	Other IL	A	ASH1 E3 (42 nt-TL/TLR)	A	4	A	5	U	7	*	A	37	U	38	U	39	cWW			cWW
20	IL_5J7L_008	5J7L	0.5725	1	Single bulged G, near cWW	AA	SSU rRNA	U	92	U	93	C	95	*	G	75	G	76	A	77	cWW		ncWWa	ncWW
21	IL_3KTW_002	3KTW	0.6520	1	Isolated non-canonical cWW with bulges	C	SRP RNA	A	177	U	178	C	180	*	G	152	G	153	U	154	cWW	ncSH	cWW	ncWW
22	IL_5ML7_010	5ML7	0.6019	1	Isolated non-canonical cWW with bulges	B	23S ribosomal RNA	G	2196	C	2197	A	2199	*	U	2181	A	2182	C	2183	cWW		cWW	cWW
23	IL_4V9F_097	4V9F	0.6666	1	Isolated non-canonical cWW with bulges	0	LSU rRNA	G	2900	C	2901	C	2903	*	G	2855	A	2856	C	2857	cWW		ncWW	cWW
24	IL_7DLZ_003	7DLZ	0.6090	1		X	RNA (45-MER)	C	33	C	34	C	36	*	G	12	A	13	G	14	cWW			ncWW
25	IL_7ELQ_002	7ELQ	0.7100	2		A	NMT1 RNA	C	32	C	33	G	36	*	C	15	A	16	G	17	cWW		ncSW	cWW
26	IL_8C3A_151	8C3A	0.5585	1		4	5.8S rRNA	U	93	C	94	A	96	*	U	64	A	65	A	66	ncWW		ncSW	cWW
27	IL_5TBW_145	5TBW	0.5303	1	Isolated non-canonical cWW pair	4	5.8S rRNA	U	93	C	94	A	96	*	U	64	A	65	A	66	cWW		ncWW	cWW
28	IL_8D28_004	8D28	0.5842	3		B	RNA (33-MER)	C	20	C	21	G	25	*	C	9	A	10	G	11	cWW			cWW
29	IL_8C3A_071	8C3A	0.6593	2		1	LSU rRNA	U	1814	U	1815	C	1818	*	G	1619	G	1620	A	1621	cWW		ncWW	cWW
30	IL_6E8U_001	6E8U	0.5383	3	Isolated non-canonical cWW pair	B	RNA (37-MER)	A	6	A	7	A	11	*	U	30	G	31	U	32	cWW		cWW	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUG*CGC	4
AAAG*CGU	2
CAGC*GGG	2
GAAG*CGC	2
UCGA*UAA	2
GAAA*UGC	1
GCCG*CAC	1
GAGC*GAC	1
CAGU*GGG	1
AAG*CGU	1
GGA*UAC	1
AGAUGC*GAU	1
CGAC*GAG	1
AACU*AUU	1
UUGC*GGA	1
AUUC*GGU	1
GCCA*UAC	1
GCAC*GAC	1
CCAC*GAG	1
CCCGG*CAG	1
CCCUUG*CAG	1
UUUUC*GGA	1
AAGGAA*UGU	1

Non-Watson-Crick part of the motif

Sequence	Counts
AA*G	5
AU*G	4
AG*G	3
CC*A	2
CA*A	2
CG*A	2
AG*A	1
A*G	1
G*A	1
GAUG*A	1
GA*A	1
AC*U	1
UG*G	1
UU*G	1
CCG*A	1
CCUU*A	1
UUU*G	1
AGGA*G	1

Release history

Release	3.87
Date	2024-08-14
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Isolated non-canonical cWW pair (15)
(9)
Isolated non-canonical cWW with bulges (3)
Single bulged G, near cWW (1)
Other IL (1)
Isolated non-canonical cWW pair (H) (1)
Basepair signature: cWW-cWW-cWW
Heat map statistics: Min 0.08 | Avg 0.46 | Max 0.88

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