IL_3J7Q_118

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GG*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Q_118 not in the Motif Atlas

Homologous match to IL_8P9A_329

Geometric discrepancy: 0.1587

The information below is about IL_8P9A_329

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.6

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

3J7Q|1|5|G|4400
3J7Q|1|5|G|4401
*
3J7Q|1|5|U|4442
3J7Q|1|5|C|4443
3J7Q|1|5|C|4444

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain I

Ribosomal protein uL16

Chain b

Ribosomal protein eL29