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Motif IL_48076.9 Version IL_48076.9 of this group appears in releases 4.7 to 4.7

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3break 4 51-31-52-32-42-53-4
1 IL_8GLP_3118GLP0.38800Major groove platform (H)L5 LSU rRNAPSU4442C4443C4444*G4400G4401ncSHcWWcWW
2 IL_8GLP_0128GLP0.47950L5 LSU rRNAC180C181G182*C255G256cWWncWWcWW
3 IL_4WF9_0264WF90.33790Major groove platformX LSU rRNAG783A784C785*G802C803cWWcSHcWW
4 IL_8B0X_0848B0X0.39990Major groove platform (H)a LSU rRNAG740A741C742*G759C760cWWcSHcWW
5 IL_4V9F_0444V9F0.29951Major groove platform0 LSU rRNAA1191A1193A1194*U1205U1206cWWcSHntSHcWW
6 IL_4LFB_0244LFB0.20310Major groove platformA SSU rRNAG594G595C596*G644C645cWWncSHntSHcWW
7 IL_3OXE_0033OXE0.20450Major groove platformAGlycine riboswitchC68U69C70*G35G36cWWcSHcWW
8 IL_3NKB_0023NKB0.13950Major groove platformBHepatitis delta virus ribozymeG55U56A57*U47C48cWWcSHcWW
9 IL_4OQU_0024OQU0.19420Major groove platformA SAM-I-IV-variantC42A43A44*U29G30cWWncSHcWW
10 IL_9E6Q_0159E6Q0.287601 LSU rRNAC310G311G312*U383G384cWWncSHcWW
11 IL_9FN2_0039FN20.25260BSAMURI-SAMG33C34A35*U12C13cWWcSHcWW
12 IL_9FN3_0039FN30.24610BSAMURI-ProSeDMAG33C34A35*U12C13cWWcSHcWW
13 IL_9DFE_0939DFE0.28340Major groove platform1A LSU rRNAU2457G2458A2459*U2493G2494ncWWtSHcWW
14 IL_4WF9_0914WF90.32080Major groove platformX LSU rRNAU2484U2485A2486*U2520G2521cWWcSHcWW
15 IL_7A0S_0857A0S0.30040Major groove platformX LSU rRNAU2436G2437A2438*U2472G2473cWWntSHcWW
16 IL_8B0X_1398B0X0.22960Major groove platform (H)a LSU rRNAC2054A2055A2056*U2621G2622cWWcSHtSHcWW
17 IL_9DFE_0789DFE0.21640Major groove platform1A LSU rRNAC2050A2051G2052*C2617G2618cWWcSHcWW
18 IL_4WF9_0784WF90.23160Major groove platformX LSU rRNAC2077A2078G2079*C2644G2645cWWcSHcWW
19 IL_7A0S_0737A0S0.20540Major groove platformX LSU rRNAC2033A2034G2035*C2596G2597cWWcSHcWW
20 IL_5VOE_0055VOE0.22060Major groove platformAAptamer 11F7t (36-MER)UFT24G25G26*CFL12G13cWWncSHcWW
21 IL_1I6U_0011I6U0.16390Major groove platformC16S RRNA FRAGMENTU9A10A11*U28G29cWWcSHntSHcWW
22 IL_8B0X_0278B0X0.13290Major groove platform (H)A SSU rRNAU594A595A596*U644G645cWWcSHntSHcWW
23 IL_8TSV_0018TSV0.13130Major groove platformA+BZika virus stem-loop A (SLA) top stemU6G7C8*G19A20cWWncSHtSHcWW
24 IL_1S03_0081S030.20210Major groove platformB47-MERC34A35A36*U16G17cWWcSHtSHcWW
25 IL_1S03_0041S030.19540Major groove platformA47-MERC34A35A36*U16G17cWWcSHtSHcWW
26 IL_9E6Q_0759E6Q0.273501 LSU rRNAC2170G2171G2172*U2731G2732cWWcSHcWW
27 IL_9H3G_1169H3G0.15550A LSU rRNAPSU2864C2865C2866*G2822G2823cWWcSHcWW
28 IL_8P9A_3298P9A0.17350Major groove platformAR LSU rRNAU2865U2866C2867*G2823G2824ncSHcWWcWW
29 IL_9E6Q_0849E6Q0.15060Major groove platform (H)1 LSU rRNAPSU2610A2611C2612*G2568G2569cWWcSHcWW
30 IL_7A0S_0847A0S0.11270Major groove platformX LSU rRNAC2475A2476C2477*G2433G2434cWWcSHcWW
31 IL_9DFE_0929DFE0.00000Major groove platform1A LSU rRNAC2496A2497C2498*G2454G2455cWWcSHcWW
32 IL_8B0X_1848B0X0.06530Major groove platform (H)a LSU rRNAC2500A2501OMC2502*G2458G2459cWWcSHcWW
33 IL_4V9F_0824V9F0.09930Major groove platform0 LSU rRNAU2531A2532C2533*G2489A2490cWWcSHcWW
34 IL_4WF9_0904WF90.11700Major groove platformX LSU rRNAC2523A2524C2525*G2481G2482cWWcSHcWW
35 IL_7A0S_0827A0S0.14040Major groove platformX LSU rRNAU2380A2381C2382*G2393G2394cWWcSHcWW
36 IL_9DFE_0909DFE0.17260Major groove platform1A LSU rRNAU2401C2402C2403*G2414G2415cWWncSHcWW
37 IL_1XJR_0021XJR0.19460Major groove platformA s2m RNAU37A38C39*G13G14cWWcSHcWW
38 IL_9DFE_0089DFE0.21600Major groove platform1A LSU rRNAU363|||EA363|||FC364*G272|||DG272|||EcWWncSHcWW
39 IL_5T5A_0025T5A0.18740Major groove platformADNA/RNA (71-MER)C50G51C52*G10G11cWWncSHcWW
40 IL_4LFB_0284LFB0.26470Major groove platformA SSU rRNAC747C748C749*G657G658cWWcWW
41 IL_5Y85_0055Y850.22610Major groove platformD+CDNA/RNA (50-MER)C40G41C42*G9G10cWWcWW
42 IL_7EOG_0017EOG0.22360Major groove platformAPepper (49-MER)C5A6C7*G44G45cWWcSHcWW
43 IL_9H3G_0139H3G0.31050A LSU rRNAU162C163C164*G252G253cWWncSHcWW
44 IL_3SUX_0023SUX0.46950Major groove platformX THF riboswitchU47G48U49*G37A38ncWWcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CAA*UG4
CAC*GG4
CAG*CG3
UAC*GG3
(PSU)CC*GG2
GAC*GC2
CGG*UG2
GCA*UC2
UGA*UG2
UAA*UG2
UCC*GG2
CGC*GG2
CCG*CG1
AAAA*UU1
GGC*GC1
CUC*GG1
GUA*UC1
UUA*UG1
(UFT)GG*(CFL)G1
UGC*GA1
UUC*GG1
(PSU)AC*GG1
CA(OMC)*GG1
UAC*GA1
CCC*GG1
UGU*GA1
Non-Watson-Crick part of the motif
SequenceCounts
A*21
G*10
C*8
U*4
AA*1

Release history

Release4.7
Date2026-02-25
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Major groove platform (31)
  • (7)
  • Major groove platform (H) (6)
    • Basepair signature
    cWW-cSH-cWW
    Heat map statistics
    Min 0.04 | Avg 0.30 | Max 0.71
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