IL_3J7Q_130

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

3J7Q|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Q_130 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.1874

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

3J7Q|1|5|C|4582
3J7Q|1|5|C|4583
3J7Q|1|5|A|4584
3J7Q|1|5|U|4585
*
3J7Q|1|5|A|4717
3J7Q|1|5|G|4718
3J7Q|1|5|G|4719
3J7Q|1|5|C|4720
3J7Q|1|5|G|4721

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain O

Ribosomal protein uL13