IL_3J7Q_135

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Q_135 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.1809

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

3J7Q|1|5|U|4638
3J7Q|1|5|G|4639
3J7Q|1|5|C|4640
*
3J7Q|1|5|G|4659
3J7Q|1|5|G|4660
3J7Q|1|5|G|4661

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain W

Ribosomal protein eL24

Chain d

Ribosomal protein eL31