IL_3J7Q_137

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

3J7Q|1|5|A|4708

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Q_137 not in the Motif Atlas

Homologous match to IL_8C3A_129

Geometric discrepancy: 0.2578

The information below is about IL_8C3A_129

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

3J7Q|1|5|A|4681
3J7Q|1|5|U|4682
3J7Q|1|5|U|4683
3J7Q|1|5|A|4684
3J7Q|1|5|U|4685
*
3J7Q|1|5|A|4705
3J7Q|1|5|G|4706
3J7Q|1|5|A|4707
3J7Q|1|5|A|4708
3J7Q|1|5|U|4709

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein uL6

Chain O

Ribosomal protein uL13

Chain m

Ribosomal protein eL40