IL_3J7Q_171
3D structure
- PDB id
- 3J7Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the idle mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GCCACU*ACUGGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J7Q_171 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3135
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J7Q|1|5|G|1855
3J7Q|1|5|C|1856
3J7Q|1|5|C|1857
3J7Q|1|5|A|1858
3J7Q|1|5|C|1859
3J7Q|1|5|U|1860
*
3J7Q|1|5|A|1874
3J7Q|1|5|C|1875
3J7Q|1|5|U|1876
3J7Q|1|5|G|1877
3J7Q|1|5|G|1878
3J7Q|1|5|C|1879
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain F
- Ribosomal protein uL30
- Chain b
- Ribosomal protein eL29
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