IL_3J7Q_184

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Q_184 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.211

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

3J7Q|1|5|G|2847
3J7Q|1|5|G|2848
3J7Q|1|5|A|2849
3J7Q|1|5|A|2850
3J7Q|1|5|G|2851
3J7Q|1|5|U|2852
3J7Q|1|5|C|2853
3J7Q|1|5|G|2854
3J7Q|1|5|G|2855
*
3J7Q|1|5|C|3837
3J7Q|1|5|U|3838
3J7Q|1|5|G|3839
3J7Q|1|5|U|3840
3J7Q|1|5|C|3841

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain V

Ribosomal protein uL14