IL_3J7Q_200

3D structure

PDB id

3J7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the idle mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CUAGG*CCGG

Length

9 nucleotides

Bulged bases

3J7Q|1|5|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7Q_200 not in the Motif Atlas

Geometric match to IL_8UIW_002

Geometric discrepancy: 0.3842

The information below is about IL_8UIW_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

3J7Q|1|5|C|2311
3J7Q|1|5|U|2312
3J7Q|1|5|A|2313
3J7Q|1|5|G|2314
3J7Q|1|5|G|2315
*
3J7Q|1|5|C|2324
3J7Q|1|5|C|2325
3J7Q|1|5|G|2326
3J7Q|1|5|G|2327

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain e

Ribosomal protein eL32

Chain r

Ribosomal protein eL28