IL_71194.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4	break		5		6		7		8	1-8	2-6	2-7	3-6	3-7	4-5
1	IL_8GLP_339	8GLP	0.5019	1		S2	SSU rRNA	C	1750	C	1751	C	1752	C	1753	*	G	1780	A	1781	G	1782	G	1784	cWW			ncWS		cWW
2	IL_4XW0_002	4XW0	0.2987	0	Tandem non-canonical cWW pairs	A+B	RNA (10-mer)	C	2	C	3	U	4	LCG	5	*	C	2	C	3	U	4	LCG	5	cWW		cWW	cWW		cWW
3	IL_4K27_003	4K27	0.3739	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	41	C	42	U	43	G	44	*	C	12	C	13	U	14	G	15	cWW		cWW	cWW		cWW
4	IL_4K27_002	4K27	0.4056	0	Tandem non-canonical cWW pairs	U	Myotonic Dystrophy Type 2 RNA	C	45	C	46	U	47	G	48	*	C	8	C	9	U	10	G	11	cWW		cWW	cWW		cWW
5	IL_8X5V_001	8X5V	0.2957	0	Tandem non-canonical cWW pairs	B	RNA (110-mer)	U	28	U	29	C	30	C	31	*	G	40	U	41	U	42	G	43	cWW		cwW	cWW		cWW
6	IL_8OI5_018	8OI5	0.3559	0	Tandem non-canonical cWW pairs (H)	1	LSU rRNA	A	445	U	446	U	447	U	448	*	G	481	U	482	U	483	U	484	cWW		ncwW		ncWS	cWW
7	IL_8GLP_319	8GLP	0.3745	0		L5	LSU rRNA	PSU	4972	U	4973	C	4974	G	4975	*	C	4983	C	4984	U	4985	G	4986	cWW		cwW	cWw		cWW
8	IL_8OI5_126	8OI5	0.2714	0	Tandem non-canonical cWW pairs (H)	1	LSU rRNA	C	3276	U	3277	U	3278	A	3279	*	U	3265	U	3266	U	3267	G	3268	cWW		cWw	cWw		cWW
9	IL_9AXU_117	9AXU	0.2845	0	Tandem non-canonical cWW pairs (H)	2	LSU rRNA	C	3412	U	3413	U	3414	U	3415	*	A	3401	U	3402	U	3403	G	3404	cWW		cWw	cWw		cWW
10	IL_8P9A_356	8P9A	0.1832	0	Tandem non-canonical cWW pairs	AR	LSU rRNA	U	3300	U	3301	U	3302	G	3303	*	C	3311	U	3312	U	3313	A	3314	cWW		cwW	cWw		cWW
11	IL_2PN3_004	2PN3	0.2375	0	Tandem non-canonical cWW pairs	A+B	RNA (24-mer) + RNA (20-mer)	C	62	U	63	U	64	C	65	*	G	102	U	103	C	104	G	105	cWW		cWW	cWw		cWW
12	IL_3TZR_003	3TZR	0.2215	0	Tandem non-canonical cWW pairs	A+B	RNA (20-mer) + RNA (16-mer)	C	62	U	63	U	64	C	65	*	G	102	U	103	C	104	G	105	cWW		cWW	cWw		cWW
13	IL_7A0S_040	7A0S	0.2063	0	Tandem non-canonical cWW pairs	X	LSU rRNA	A	1175	U	1176	U	1177	C	1178	*	G	1196	U	1197	C	1198	U	1199	cWW		cWW	ncWw		cWW
14	IL_8P9A_411	8P9A	0.2965	0	Tandem non-canonical cWW pairs	sR	SSU rRNA	C	726	U	727	U	728	G	729	*	C	709	U	710	U	711	G	712	ncWW		cwW	cWw		cWW
15	IL_5C5W_001	5C5W	0.2185	0	Tandem non-canonical cWW pairs	A	RNA (19-mer)	C	15\|\|\|\|5_556	U	16\|\|\|\|5_556	A	17\|\|\|\|5_556	G	18\|\|\|\|5_556	*	C	2	C	3	U	4	G	5	cWW		cwW	cWW		cWW
16	IL_8GLP_220	8GLP	0.2438	0		S2	SSU rRNA	U	581	U	582	A	583	A	584	*	U	566	C	567	C	568	A	569	cWW		ncWW	ncWS		cWW
17	IL_8GLP_294	8GLP	0.2974	0	Tandem non-canonical cWW pairs (H)	L5	LSU rRNA	PSU	1781	PSU	1782	C	1783	U	1784	*	A	1746	U	1747	U	1748	A	1749	cWW		cwW			cWW
18	IL_8HNT_001	8HNT	0.2426	0	Tandem non-canonical cWW pairs	B	sgRNA	C	32	U	33	C	34	C	35	*	G	54	U	55	U	56	G	57	cWW		cwW	ncWS		cWW
19	IL_6JDV_001	6JDV	0.2221	0	Tandem non-canonical cWW pairs	B	CRISPR RNA direct repeat element	C	32	U	33	C	34	C	35	*	G	66	U	67	U	68	G	69	cWW		cwW	ncWS		cWW
20	IL_4UYK_003	4UYK	0.1412	0	Tandem non-canonical cWW pairs	R	SRP RNA	G	81	U	82	U	83	C	84	*	G	117	U	118	U	119	C	120	cWW		cwW	cWw		cWW
21	IL_8OI5_125	8OI5	0.1603	0	Tandem non-canonical cWW pairs (H)	1	LSU rRNA	U	3214	U	3215	U	3216	G	3217	*	C	3200	U	3201	U	3202	A	3203	cWW		cwW	cWw		cWW
22	IL_8OI5_057	8OI5	0.1327	0	Tandem non-canonical cWW pairs (H)	1	LSU rRNA	A	1339	U	1340	U	1341	G	1342	*	C	1354	U	1355	U	1356	U	1357	cWW		cwW	cWw		cWW
23	IL_8P9A_355	8P9A	0.1287	0	Tandem non-canonical cWW pairs	AR	LSU rRNA	C	3235	U	3236	U	3237	G	3238	*	C	3249	U	3250	U	3251	G	3252	cWW		cwW	cWw		cWW
24	IL_6MWN_005	6MWN	0.1345	0	Tandem non-canonical cWW pairs	B	IRES	A	643	U	644	U	645	G	646	*	C	661	U	662	U	663	U	664	cWW		cwW	cWw		cWW
25	IL_3R2D_002	3R2D	0.1301	0	Tandem non-canonical cWW pairs	S+R	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9	cWW		cwW	cWw		cWW
26	IL_8ID2_001	8ID2	0.0000	0	Tandem non-canonical cWW pairs	C	RNA (24-mer)	A	5	C	6	U	7	G	8	*	C	17	U	18	U	19	U	20	cWW	ncWW	cWW	cWw		cWW
27	IL_8CRE_475	8CRE	0.1358	0	Tandem non-canonical cWW pairs	CM	SSU rRNA	G	1710	C	1711	U	1712	G	1713	*	C	1662	U	1663	C	1664	C	1665	cWW		ncWw	cWw		cWW
28	IL_4EYA_003	4EYA	0.2055	0	Tandem non-canonical cWW pairs	f+e	RNA (12-mer)	C	6	U	7	U	8	G	9	*	C	6	U	7	U	8	G	9	cWW		cwW	cWw		cWW
29	IL_8P9A_462	8P9A	0.2261	0	Tandem non-canonical cWW pairs	sR	SSU rRNA	C	1675	U	1676	C	1677	A	1678	*	U	1723	U	1724	U	1725	G	1726	cWW		cwW			cWW
30	IL_8UIW_002	8UIW	0.2213	0	Tandem non-canonical cWW pairs	N	azaaromatic riboswitch aptamer (yjdF RNA)	G	112	U	113	C	114	G	115	*	C	100	U	101	U	102	C	103	cWW		cwW			cWW
31	IL_8OI5_044	8OI5	0.2423	0		1	LSU rRNA	U	1037	U	1038	C	1039	U	1040	*	A	1002	U	1003	U	1004	A	1005	cWW		cwW	ncWS		ncWW
32	IL_8P9A_269	8P9A	0.2437	0	Tandem non-canonical cWW pairs	AR	LSU rRNA	U	1041	U	1042	C	1043	U	1044	*	A	1006	U	1007	U	1008	A	1009	cWW		cwW			cWW
33	IL_8P9A_380	8P9A	0.2615	0	Tandem non-canonical cWW pairs	sR	SSU rRNA	U	302	U	303	U	304	C	305	*	G	109	U	110	U	111	A	112	cWW		cwW	cWw		cWW
34	IL_8CRE_397	8CRE	0.2532	0	Tandem non-canonical cWW pairs	CM	SSU rRNA	U	300	U	301	U	302	C	303	*	G	109	U	110	U	111	A	112	cWW		cwW	cWw		cWW
35	IL_7LYF_001	7LYF	0.3132	1	Isolated cWH basepair with non-canonical cWW	A	Dengue virus SLA	A	90	G	91	U	93	C	94	*	G	39	U	40	C	41	U	42	cWW		ncHW	ncWw		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUG*CUUG	4
CCUG*CCUG	2
UUUG*CUUA	2
CUUC*GUCG	2
CUCC*GUUG	2
AUUG*CUUU	2
UUCU*AUUA	2
UUUC*GUUA	2
CCCC*GAGCG	1
CCU(LCG)*CCU(LCG)	1
UUCC*GUUG	1
AUUU*GUUU	1
(PSU)UCG*CCUG	1
CUUA*UUUG	1
CUUU*AUUG	1
AUUC*GUCU	1
CUAG*CCUG	1
UUAA*UCCA	1
(PSU)(PSU)CU*AUUA	1
GUUC*GUUC	1
ACUG*CUUU	1
GCUG*CUCC	1
CUCA*UUUG	1
GUCG*CUUC	1
AGUUC*GUCU	1

Non-Watson-Crick part of the motif

Sequence	Counts
UU*UU	14
UC*UU	7
CU*CU	3
UU*UC	3
CC*AGC	1
UC*CU	1
UA*CU	1
UA*CC	1
(PSU)C*UU	1
CU*UU	1
CU*UC	1
GUU*UC	1

Release history

Release	4.1
Date	2025-09-10
Status	Updated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Motif IL_71194.2 Version IL_71194.2 of this group appears in releases 4.1 to 4.1 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_71194.2 Version IL_71194.2 of this group appears in releases 4.1 to 4.1

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