IL_3J7R_045

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_045 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.1541

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

3J7R|1|5|C|1431
3J7R|1|5|G|1432
3J7R|1|5|A|1433
3J7R|1|5|G|1434
*
3J7R|1|5|C|1450
3J7R|1|5|G|1451
3J7R|1|5|A|1452
3J7R|1|5|G|1453

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein eL18