IL_3J7R_096

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

3J7R|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_096 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.151

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3J7R|1|5|C|2867
3J7R|1|5|G|2868
3J7R|1|5|U|2869
3J7R|1|5|A|2870
3J7R|1|5|A|2871
3J7R|1|5|C|2872
*
3J7R|1|5|G|2877
3J7R|1|5|G|2878
3J7R|1|5|A|2879
3J7R|1|5|U|2880
3J7R|1|5|A|2881
3J7R|1|5|A|2882
3J7R|1|5|G|2883

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain n

Ribosomal protein eL41

Chain p

Ribosomal protein eL43