IL_3J7R_111

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_111 not in the Motif Atlas

Geometric match to IL_3IGI_013

Geometric discrepancy: 0.2936

The information below is about IL_3IGI_013

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

3J7R|1|5|A|3943
3J7R|1|5|G|3944
3J7R|1|5|A|3945
*
3J7R|1|5|U|4068
3J7R|1|5|U|4069

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain SB

Ribosomal protein eS1

Chain i

Ribosomal protein eL36