IL_3J7R_169

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

3J7R|1|S2|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_169 not in the Motif Atlas

Geometric match to IL_4WF9_098

Geometric discrepancy: 0.3369

The information below is about IL_4WF9_098

Detailed Annotation

Single bulged A

Broad Annotation

Single bulged A

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

3J7R|1|S2|U|112
3J7R|1|S2|G|113
3J7R|1|S2|G|114
3J7R|1|S2|U|115
*
3J7R|1|S2|A|348
3J7R|1|S2|A|349

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SI

Ribosomal protein eS8

Chain SL

Ribosomal protein uS17