IL_3J7R_213
3D structure
- PDB id
- 3J7R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the translating mammalian ribosome-Sec61 complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CCUG*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J7R_213 not in the Motif Atlas
- Geometric match to IL_3WBM_002
- Geometric discrepancy: 0.2779
- The information below is about IL_3WBM_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
3J7R|1|S2|C|1230
3J7R|1|S2|C|1231
3J7R|1|S2|U|1232
3J7R|1|S2|G|1233
*
3J7R|1|S2|C|1525
3J7R|1|S2|G|1526
3J7R|1|S2|C|1527
3J7R|1|S2|G|1528
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain S6
- Transfer RNA; tRNA
- Chain SQ
- Ribosomal protein uS9
- Chain SS
- Ribosomal protein uS13
- Chain ST
- Ribosomal protein eS19
- Chain SU
- Ribosomal protein uS10
Coloring options: