IL_3J7R_235

3D structure

PDB id

3J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the translating mammalian ribosome-Sec61 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUG*UA

Length

5 nucleotides

Bulged bases

3J7R|1|S2|U|1721

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J7R_235 not in the Motif Atlas

Geometric match to IL_4V88_469

Geometric discrepancy: 0.2728

The information below is about IL_4V88_469

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3J7R|1|S2|U|1720
3J7R|1|S2|U|1721
3J7R|1|S2|G|1722
*
3J7R|1|S2|U|1812
3J7R|1|S2|A|1813

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain SX

Ribosomal protein uS12

Chain V

Ribosomal protein uL14

Chain n

Ribosomal protein eL41