3D structure

PDB id
3J7Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the large ribosomal subunit from human mitochondria
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GC*GUAU
Length
6 nucleotides
Bulged bases
3J7Y|1|A|U|2628, 3J7Y|1|A|A|2629
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J7Y_036 not in the Motif Atlas
Geometric match to IL_7V9E_001
Geometric discrepancy: 0.1716
The information below is about IL_7V9E_001
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.2
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

3J7Y|1|A|G|2596
3J7Y|1|A|C|2597
*
3J7Y|1|A|G|2627
3J7Y|1|A|U|2628
3J7Y|1|A|A|2629
3J7Y|1|A|U|2630

Current chains

Chain A
16S rRNA

Nearby chains

No other chains within 10Å

Coloring options:


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