3J7Y Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3J7Y_001 | 1/A/1722:1729 | No text annotation | geometric HL_4WF9_006 HL_30068.2 | |
| HL_3J7Y_002 | 1/A/1746:1752 | No text annotation | geometric HL_5J7L_141 HL_37369.2 | |
| HL_3J7Y_003 | 1/A/1786:1791 | GNRA | homologous HL_7RQB_015 NA | |
| HL_3J7Y_004 | 1/A/1803:1807 | No text annotation | ||
| HL_3J7Y_005 | 1/A/1831:1839 | No text annotation | geometric HL_4V88_198 NA | |
| HL_3J7Y_006 | 1/A/1847:1856 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_28252.8 | |
| HL_3J7Y_007 | 1/A/1884:1889 | No text annotation | geometric HL_5J7L_143 HL_75660.5 | |
| HL_3J7Y_009 | 1/A/1954:1963 | No text annotation | homologous HL_7RQB_023 NA | |
| HL_3J7Y_010 | 1/A/1988:1996 | No text annotation | geometric HL_5TBW_021 NA | |
| HL_3J7Y_011 | 1/A/2035:2040 | No text annotation | homologous HL_4WF9_025 HL_55195.3 | |
| HL_3J7Y_013 | 1/A/2107:2114 | GNRA | homologous HL_7RQB_027 NA | |
| HL_3J7Y_014 | 1/A/2129:2136 | No text annotation | homologous HL_5J7L_160 HL_42998.2 | |
| HL_3J7Y_043 | 1/A/2170:2190 | No text annotation | ||
| HL_3J7Y_015 | 1/A/2175:2185 | No text annotation | geometric HL_5D8H_001 HL_19210.3 | |
| HL_3J7Y_016 | 1/A/2202:2209 | GNRA wlth tandem sheared | homologous HL_6PRV_002 HL_81538.2 | |
| HL_3J7Y_017 | 1/A/2279:2286 | No text annotation | ||
| HL_3J7Y_018 | 1/A/2319:2324 | UNCG | geometric HL_5J7L_171 HL_34617.5 | |
| HL_3J7Y_020 | 1/A/2400:2403 | No text annotation | geometric HL_7RQB_039 NA | |
| HL_3J7Y_021 | 1/A/2428:2435 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_3J7Y_022 | 1/A/2497:2507 | No text annotation | homologous HL_5J7L_178 HL_01962.2 | |
| HL_3J7Y_023 | 1/A/2518:2532 | No text annotation | ||
| HL_3J7Y_044 | 1/A/2556:2559 | No text annotation | ||
| HL_3J7Y_026 | 1/A/2612:2620 | No text annotation | homologous HL_7A0S_048 HL_20167.2 | |
| HL_3J7Y_027 | 1/A/2690:2699 | No text annotation | homologous HL_4WF9_047 HL_61996.2 | |
| HL_3J7Y_029 | 1/A/2812:2820 | No text annotation | homologous HL_7RQB_053 NA | |
| HL_3J7Y_030 | 1/A/2828:2840 | No text annotation | ||
| HL_3J7Y_031 | 1/A/2862:2870 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_3J7Y_032 | 1/A/2902:2907 | GNRA | geometric HL_5B2P_001 HL_37824.7 | |
| HL_3J7Y_033 | 1/A/2958:2966 | No text annotation | homologous HL_5J7L_193 HL_32735.2 | |
| HL_3J7Y_034 | 1/A/3015:3022 | No text annotation | homologous HL_7RQB_061 NA | |
| HL_3J7Y_035 | 1/A/3038:3044 | No text annotation | homologous HL_7A0S_061 HL_30068.2 | |
| HL_3J7Y_036 | 1/A/3081:3086 | GNRA | homologous HL_7RQB_063 NA | |
| HL_3J7Y_037 | 1/A/3126:3131 | GNRA | geometric HL_3LQX_001 HL_37824.7 | |
| HL_3J7Y_038 | 1/A/3154:3159 | No text annotation | ||
| HL_3J7Y_039 | 1/A/3176:3193 | No text annotation | geometric HL_7A0S_074 NA | |
| HL_3J7Y_040 | 1/A/3216:3224 | No text annotation | geometric HL_7RQB_068 NA | |
| HL_3J7Y_042 | 1/B/1630:1638 | Anticodon loop related | geometric HL_5T83_002 HL_06059.6 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3J7Y_008 | No text annotation | ||
| HL_3J7Y_012 | Externally structured | ||
| HL_3J7Y_019 | No text annotation | ||
| HL_3J7Y_024 | No text annotation | ||
| HL_3J7Y_025 | No text annotation | ||
| HL_3J7Y_028 | No text annotation | ||
| HL_3J7Y_045 | No text annotation | ||
| HL_3J7Y_041 | tRNA D-loop |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_3J7Y_061 | 1/A/1672:1678, 1/A/1797:1816 | No text annotation | ||
| IL_3J7Y_001 | 1/A/1682:1683, 1/A/1768:1770 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
| IL_3J7Y_002 | 1/A/1739:1745, 1/A/1753:1758 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_106 IL_26307.2 | |
| IL_3J7Y_003 | 1/A/1845:1847, 1/A/1856:1858 | Isolated non-canonical cWW pair | geometric IL_7A0S_011 IL_07785.1 | |
| IL_3J7Y_004 | 1/A/1862:1863, 1/A/2301:2303 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_3J7Y_005 | 1/A/1863:1865, 1/A/2300:2301 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_3J7Y_006 | 1/A/1875:1876, 1/A/1897:1899 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_3J7Y_062 | 1/A/1875:1879, 1/A/1895:1899 | Triple non-canonical cWW pairs | geometric IL_8VM9_004 IL_49751.4 | |
| IL_3J7Y_007 | 1/A/1876:1879, 1/A/1895:1897 | No text annotation | geometric IL_4V84_070 NA | |
| IL_3J7Y_008 | 1/A/1880:1883, 1/A/1890:1894 | No text annotation | ||
| IL_3J7Y_009 | 1/A/1904:1906, 1/A/2016:2018 | Isolated non-canonical cWW pair | geometric IL_7A0S_014 IL_87907.2 | |
| IL_3J7Y_010 | 1/A/1906:1910, 1/A/2009:2016 | tHW-tHW cross-strand stack | homologous IL_7RQB_018 NA | |
| IL_3J7Y_011 | 1/A/1913:1915, 1/A/2004:2006 | Isolated non-canonical cWW pair | geometric IL_5TBW_079 NA | |
| IL_3J7Y_012 | 1/A/1925:1927, 1/A/1977:1979 | Isolated non-canonical cWW contact | geometric IL_5UNE_001 IL_44465.1 | |
| IL_3J7Y_013 | 1/A/1929:1930, 1/A/1973:1975 | Single bulged A | homologous IL_5J7L_261 IL_31462.6 | |
| IL_3J7Y_014 | 1/A/1948:1951, 1/A/1966:1968 | Major groove platform with extra cWW | homologous IL_7A0S_019 IL_51387.2 | |
| IL_3J7Y_015 | 1/A/1985:1987, 1/A/1997:2001 | Multiple bulged bases | homologous IL_5J7L_265 IL_06549.2 | |
| IL_3J7Y_017 | 1/A/2046:2048, 1/A/2091:2094 | Other IL | geometric IL_5TBW_064 NA | |
| IL_3J7Y_018 | 1/A/2057:2063, 1/A/2076:2082 | No text annotation | ||
| IL_3J7Y_019 | 1/A/2145:2147, 1/A/2254:2255 | Single bulged C | homologous IL_5J7L_276 IL_61258.15 | |
| IL_3J7Y_020 | 1/A/2149:2153, 1/A/2248:2252 | UAA/GAN | homologous IL_7RQB_036 NA | |
| IL_3J7Y_021 | 1/A/2168:2170, 1/A/2190:2192 | Isolated near basepair | geometric IL_4V88_406 NA | |
| IL_3J7Y_022 | 1/A/2170:2173, 1/A/2187:2190 | No text annotation | homologous IL_6PRV_001 IL_92446.2 | |
| IL_3J7Y_024 | 1/A/2197:2200, 1/A/2211:2212 | No text annotation | homologous IL_6PRV_002 NA | |
| IL_3J7Y_025 | 1/A/2306:2313, 1/A/2674:2680 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 IL_04346.10 | |
| IL_3J7Y_026 | 1/A/2329:2333, 1/A/2441:2448 | No text annotation | ||
| IL_3J7Y_063 | 1/A/2377:2381, 1/A/2411:2419 | No text annotation | ||
| IL_3J7Y_064 | 1/A/2384:2400, 1/A/2403:2408 | No text annotation | ||
| IL_3J7Y_027 | 1/A/2456:2461, 1/A/2666:2668 | No text annotation | ||
| IL_3J7Y_028 | 1/A/2465:2466, 1/A/2660:2662 | Single stack bend | geometric IL_4V83_236 IL_90729.1 | |
| IL_3J7Y_029 | 1/A/2466:2469, 1/A/2658:2660 | No text annotation | ||
| IL_3J7Y_030 | 1/A/2470:2473, 1/A/2656:2657 | Major groove platform; stack outside cWW | geometric IL_7RQB_066 NA | |
| IL_3J7Y_065 | 1/A/2470:2478, 1/A/2653:2657 | No text annotation | homologous IL_5J7L_386 IL_22854.4 | |
| IL_3J7Y_031 | 1/A/2473:2478, 1/A/2653:2656 | Intercalated tWH | homologous IL_5J7L_307 IL_76758.2 | |
| IL_3J7Y_032 | 1/A/2478:2487, 1/A/2648:2653 | No text annotation | ||
| IL_3J7Y_033 | 1/A/2490:2491, 1/A/2643:2645 | Single bulged A | homologous IL_7RQB_069 NA | |
| IL_3J7Y_034 | 1/A/2548:2551, 1/A/2566:2567 | No text annotation | homologous IL_4WF9_070 NA | |
| IL_3J7Y_035 | 1/A/2552:2553, 1/A/2562:2565 | Major groove intercalation | homologous IL_5J7L_315 IL_82107.4 | |
| IL_3J7Y_036 | 1/A/2596:2597, 1/A/2627:2630 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_3J7Y_037 | 1/A/2597:2608, 1/A/2624:2627 | No text annotation | homologous IL_4WF9_077 IL_42218.2 | |
| IL_3J7Y_038 | 1/A/2712:2715, 1/A/3104:3106 | No text annotation | geometric IL_6DME_003 IL_55516.2 | |
| IL_3J7Y_039 | 1/A/2717:2719, 1/A/3099:3102 | No text annotation | homologous IL_5J7L_321 IL_83389.2 | |
| IL_3J7Y_040 | 1/A/2730:2732, 1/A/2929:2930 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_3J7Y_041 | 1/A/2733:2734, 1/A/2925:2928 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_3J7Y_042 | 1/A/2744:2746, 1/A/2802:2803 | Single bulged A | geometric IL_7KGA_005 IL_31462.6 | |
| IL_3J7Y_043 | 1/A/2747:2748, 1/A/2799:2801 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_3J7Y_044 | 1/A/2748:2750, 1/A/2798:2799 | Single stack bend | geometric IL_4LFB_041 IL_90729.1 | |
| IL_3J7Y_046 | 1/A/2856:2860, 1/A/2872:2876 | Triple sheared | geometric IL_5J7L_274 IL_17948.2 | |
| IL_3J7Y_047 | 1/A/2941:2942, 1/A/2983:2985 | Major groove platform | homologous IL_7RQB_092 NA | |
| IL_3J7Y_048 | 1/A/2943:2946, 1/A/2980:2982 | Major groove platform with extra pair | homologous IL_7RQB_093 NA | |
| IL_3J7Y_049 | 1/A/2946:2948, 1/A/2976:2980 | Major groove minor groove platform with extra cWW | geometric IL_5J7L_337 IL_51387.2 | |
| IL_3J7Y_050 | 1/A/2953:2955, 1/A/2968:2971 | No text annotation | geometric IL_4P3T_002 NA | |
| IL_3J7Y_051 | 1/A/2955:2957, 1/A/2967:2968 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_3J7Y_052 | 1/A/2994:2995, 1/A/3067:3069 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_3J7Y_053 | 1/A/2997:2999, 1/A/3061:3065 | Isolated non-canonical cWW with bulges | geometric IL_4WF9_095 IL_07785.1 | |
| IL_3J7Y_054 | 1/A/2999:3000, 1/A/3058:3061 | No text annotation | homologous IL_5J7L_341 IL_42626.2 | |
| IL_3J7Y_055 | 1/A/3008:3010, 1/A/3027:3031 | No text annotation | ||
| IL_3J7Y_056 | 1/A/3078:3079, 1/A/3088:3090 | Single bulged A | homologous IL_5J7L_344 IL_31462.6 | |
| IL_3J7Y_057 | 1/A/3115:3117, 1/A/3139:3141 | Isolated non-canonical cWW pair | geometric IL_5TBW_079 NA | |
| IL_3J7Y_058 | 1/A/3119:3126, 1/A/3131:3137 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_3J7Y_059 | 1/A/3148:3152, 1/A/3161:3163 | C-loop | geometric IL_4JRC_003 IL_63596.11 | |
| IL_3J7Y_060 | 1/B/1627:1629, 1/B/1639:1641 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3J7Y_016 | Single stack bend | ||
| IL_3J7Y_023 | No text annotation | ||
| IL_3J7Y_045 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3J7Y_006 | 1/A/1678:1681, 1/A/1771:1785, 1/A/1792:1797 | No text annotation | ||
| J3_3J7Y_001 | 1/A/1915:1921, 1/A/1983:1985, 1/A/2001:2004 | No text annotation | homologous J3_7A0S_004 J3_64189.2 | |
| J3_3J7Y_002 | 1/A/1930:1932, 1/A/1942:1946, 1/A/1970:1973 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_3J7Y_003 | 1/A/2336:2343, 1/A/2423:2427, 1/A/2436:2438 | No text annotation | ||
| J3_3J7Y_004 | 1/A/2343:2345, 1/A/2368:2375, 1/A/2421:2423 | No text annotation | ||
| J3_3J7Y_007 | 1/A/2846:2848, 1/A/2890:2900, 1/A/2909:2915 | No text annotation | ||
| J3_3J7Y_005 | 1/A/3004:3007, 1/A/3032:3034, 1/A/3048:3054 | No text annotation | homologous J3_7RQB_012 NA | |
| J4_3J7Y_001 | 1/A/2314:2317, 1/A/2326:2327, 1/A/2450:2453, 1/A/2671:2673 | No text annotation | ||
| J4_3J7Y_002 | 1/A/2336:2345, 1/A/2368:2375, 1/A/2421:2427, 1/A/2436:2438 | No text annotation | ||
| J4_3J7Y_003 | 1/A/2492:2496, 1/A/2508:2513, 1/A/2537:2542, 1/A/2637:2642 | No text annotation | ||
| J4_3J7Y_004 | 1/A/2544:2546, 1/A/2569:2570, 1/A/2587:2596, 1/A/2630:2635 | No text annotation | homologous J4_5J7L_026 J4_93343.1 | |
| J5_3J7Y_001 | 1/A/1827:1829, 1/A/1841:1845, 1/A/1858:1860, 1/A/2305:2306, 1/A/2680:2681 | No text annotation | homologous J5_7A0S_003 J5_43153.5 | |
| J5_3J7Y_002 | 1/A/1865:1875, 1/A/1899:1903, 1/A/2019:2022, 1/A/2271:2275, 1/A/2290:2300 | No text annotation | ||
| J5_3J7Y_003 | 1/A/2720:2727, 1/A/2933:2941, 1/A/2985:2994, 1/A/3069:3075, 1/A/3093:3098 | No text annotation | ||
| J5_3J7Y_004 | 1/A/2737:2740, 1/A/2807:2810, 1/A/2822:2823, 1/A/2845:2846, 1/A/2915:2922 | No text annotation | homologous J5_7A0S_007 J5_39529.1 | |
| J6_3J7Y_001 | 1/A/2027:2032, 1/A/2043:2045, 1/A/2095:2098, 1/A/2123:2127, 1/A/2138:2143, 1/A/2257:2266 | No text annotation | ||
| J6_3J7Y_002 | 1/A/2737:2740, 1/A/2807:2810, 1/A/2822:2823, 1/A/2845:2848, 1/A/2890:2900, 1/A/2909:2922 | No text annotation |
Problematic loops
No problematic loops
Coloring options: